Fraggy

Fraggy is the slash ship between Fred Jones and Shaggy Rogers from the Scooby-Doo fandom.

Scoob!
Shaggy and Fred are childhood friends who met each other on Halloween night. While Shaggy and Scooby were trick-or-treating and enjoying all the candy they got so far, a group of kids started bullying them. One of them took the candy bag off of Shaggy's hand and threw it onto a haunted-looking house. Defeated and sad, Shaggy and Scooby sat down on the floor, while consoling each other. At that moment, a shining Fred, dressed in a knight's costume, approached Shaggy along with the gang, and asked him if he was alright. Fren extends his hand for Shaggy to take and helps him get up, while arranging his cap. He then introduces the gang to Shaggy and he lets Fred know about what happens to his candy bag.

So Fred is quick to volunteer to get Shaggy's candy bag back. But Shaggy warns him about the haunted house, so Fred gets in front of Shaggy to protect him. Once he opens the door, he immediately spots Shaggy's candy bar on the floor and gives it back to Shaggy. However, at that moment, the gang finds themselves with another mystery to solve. After they manage to do so, Fred invites Shaggy and Scooby to join the gang.

Scooby-Doo Where Are You!
Fred is always encouraging Shaggy and Scooby to do something they don’t want to by appealing to who they are as people. And always  makes sure to give Shaggy and Scooby a task that they actually want to do or don’t entirely hate.

Also, in "A Menace In Venice", when Shaggy’s in danger, he and Fred meet eyes, and they both just immediately know what to do, as they grab each other, successfully getting Shaggy to safety.

What's New Scooby-Doo
In the episode "A Scooby-Doo Valentine," the Mystery Inc. gang goes home on Valentine's Day, to take a day off. And then it's confirmed that Shaggy and Fred live together alongside Scooby in their own home. The two of them are seen being very domestic, as Fred prepares breakfast as Shaggy appears in the kitchen with his robe on, as if he just woke up.

Scooby-Doo on Zombie Island
When Shaggy was getting ready for dinner in the room he was staying in, a ghost suddenly appeared in his mirror, scaring him terribly. So Shaggy's first instinct was to run to Fred's room to jump into his arms and ask for his help.

Scooby-Doo And The Alien Invaders
Fred is quick to realize how sad Shaggy was after saying goodbye to the alien friend he had made, so he comforts him.

Scooby-Doo And The Ghoul Legend Of The Vampire
The gang invites Shaggy and Scooby to join them to explore Australia's Outback, but Shaggy is really hesitant to go there. So Fred is quick to comfort him by telling him that a musical festival is going to be held there. Shaggy is still hesitant when he hears the festival is going to be vampire-themed. So Fred tells him that that is just the name of the place. Once Shaggy hears there'll be all types of food at the festival, he's on board.

Be Cool Scooby-Doo
When the gang gets invited to a wedding, it turns into a spooky mystery when a ghost bride threatens to ruin everything. The gang manages to save the wedding and as the couple gets married, Daphne gets Velma closer to her, putting her arm around her shoulder and dreamily sighing, "I love weddings." Fred and Shaggy look at each other and do the same thing.

Fanon
is one of the most popular ships in the Scooby-Doo fandom. It's mainly rivaled by Fraphne. However, it's the most popular slash ship of the series. Most fans started shipping them after they realised the two of them live together. But also, after Scooby-Doo Mystery Incorporated was released, lots of fans started appreciating their bond a lot more.

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Trivia

 * In The Scooby-Doo Show, Shaggy pretty consistently jumps into Fred’s arms when he’s scared. When the whole group is there, he usually defaults to jumping into Fred’s arms.
 * Fred very consistently calls Shaggy ‘Shag.’ Far more consistently than the others use that same nickname.
 * In Scooby-Doo! Mystery Incorporated, Fred said "Unless we're dating, then it's Freddie" in the episode "The Wild Brood". In a later episode, Shaggy called him "Freddie" when Fred was endangered.